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ABOUT THIS RECORD
ID:
MNEST034832
species:
Strongylocentrotus purpuratus
miRNA family:
mir-219
source:
miRBase, original name:
spu-mir-219
(
MI0010221
)
Taxonomy by NCBI:
Strongylocentrotus purpuratus
Strongylocentrotus
Strongylocentrotidae
Echinoida
Echinacea
Euechinoidea
Echinoidea
Echinozoa
Eleutherozoa
Echinodermata
Deuterostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGATTGTCCGAACGCAATTCTTG
miRNA*
AGAACTGTGTACGGACATCAGT
mismatches:
2
bulges:
1
View larger
pre-miRNA
TCCATGCGAGTGTTCTCCGT
TGATTGTCCGAACGCAATTCTTG
TTGAATTTCCTAGTCA
AGAACTGTGTACGGACATCAGT
GGTTGATACCGCTAGCACC
T
dot-bracket secondary structure
.....(((.(((((..((((
((((.(((((.(((((.((((((
(((.......))).))
)))).))))).)))))))))))
))..)))))))).......
.
SIMILARITIES
miRBase
dan-mir-219
:
0.00000008
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
mir-219: 3e-32
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
454
references
[
1
] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ,
Evol Dev. 11:50-68(2009).
,
"The deep evolution of metazoan microRNAs"