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ABOUT THIS RECORD
ID:
MNEST034836
species:
Strongylocentrotus purpuratus
miRNA family:
mir-278_2
source:
miRBase, original name:
spu-mir-278
(
MI0010210
)
Taxonomy by NCBI:
Strongylocentrotus purpuratus
Strongylocentrotus
Strongylocentrotidae
Echinoida
Echinacea
Euechinoidea
Echinoidea
Echinozoa
Eleutherozoa
Echinodermata
Deuterostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCGGTGGGACTTTCGTTCGATT
miRNA*
TGGAATGAAAGCCTCGCCAATC
mismatches:
5
bulges:
0
View larger
pre-miRNA
CAAACTGCCTCTTCTCC
TGGAATGAAAGCCTCGCCAATC
TGTCATTGTTACTAAGCTAGG
TCGGTGGGACTTTCGTTCGATT
AGAAGATGGTAGATACTA
dot-bracket secondary structure
....(((((((((((..
(.(((((((((.((((((.(((
((...(((....)))..))))
).)))))).))))))))).)..
)))))).)))))......
SIMILARITIES
miRBase
api-mir-278
:
0.00007
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
no hits
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
454
references
[
1
] Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M,
Evol Dev. 13:15-27(2011).
,
"microRNA complements in deuterostomes: origin and evolution of microRNAs"
[
2
] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ,
Evol Dev. 11:50-68(2009).
,
"The deep evolution of metazoan microRNAs"