ABOUT THIS RECORDspecies: Strongylocentrotus purpuratus
source: miRBase, original name: spu-mir-2002 (MI0010272)
Taxonomy by NCBI:
Strongylocentrotus purpuratus Strongylocentrotus Strongylocentrotidae Echinoida Echinacea Euechinoidea Echinoidea Echinozoa Eleutherozoa Echinodermata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAATACATCTGCTGGTTTTTAT miRNA* AAGACCAACAGGTGTTATTCTCA mismatches: 2 bulges: 2 |
pre-miRNA
TATTCATCAGACTGATAAGACCAACAGGTGTTATTCTCATGTGTGATGTACAGATCTGTGAATACATCTGCTGGTTTTTATTAGGCTCGATGATAG
dot-bracket secondary structure
...(((((((.((((((((((((.(((((((.((((.((.((.((.....)).)).)).))))))))))).))).))))))))).)).)))))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M, Evol Dev. 13:15-27(2011)., "microRNA complements in deuterostomes: origin and evolution of microRNAs"
[2] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
TATTCATCAGACTGATAAGACCAACAGGTGTTATTCTCATGTGTGATGTACAGATCTGTGAATACATCTGCTGGTTTTTATTAGGCTCGATGATAG
dot-bracket secondary structure
...(((((((.((((((((((((.(((((((.((((.((.((.((.....)).)).)).))))))))))).))).))))))))).)).)))))...
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M, Evol Dev. 13:15-27(2011)., "microRNA complements in deuterostomes: origin and evolution of microRNAs"
[2] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
