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ABOUT THIS RECORD
ID:
MNEST034846
species:
Strongylocentrotus purpuratus
miRNA family:
mir-2008
source:
miRBase, original name:
spu-mir-2008
(
MI0010278
)
Taxonomy by NCBI:
Strongylocentrotus purpuratus
Strongylocentrotus
Strongylocentrotidae
Echinoida
Echinacea
Euechinoidea
Echinoidea
Echinozoa
Eleutherozoa
Echinodermata
Deuterostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
ATCAGCCTCGCTGTCAATACG
miRNA*
TATTAACAATGTGGCTGATGA
mismatches:
3
bulges:
0
View larger
pre-miRNA
TTCTCCACTTTTTACCCCG
TATTAACAATGTGGCTGATGA
GGAATCTTATGAACC
ATCAGCCTCGCTGTCAATACG
AGGTAAGGAGTGACAA
dot-bracket secondary structure
.....(((((((((((.((
((((.(((.((.((((((((.
(...((....)).))
))))))).)).))).))))))
.)))))))))))....
SIMILARITIES
miRBase
sko-mir-2008
:
0.0000003
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
no hits
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
454
references
[
1
] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ,
Evol Dev. 11:50-68(2009).
,
"The deep evolution of metazoan microRNAs"