ABOUT THIS RECORDspecies: Strongylocentrotus purpuratus
miRNA family: mir-2012
source: miRBase, original name: spu-mir-2012 (MI0010270)
Taxonomy by NCBI:
Strongylocentrotus purpuratus Strongylocentrotus Strongylocentrotidae Echinoida Echinacea Euechinoidea Echinoidea Echinozoa Eleutherozoa Echinodermata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGTACTGGCATATGGACATTG miRNA* ATGTTCATCTGTCCGTACTGCC mismatches: 2 bulges: 0 |
pre-miRNA
TGGGTTCTTGATAGTACTGGCATATGGACATTGTTGTAATAATCTTACTCTCAATGTTCATCTGTCCGTACTGCCAAGTGCCTG
dot-bracket secondary structure
.((((.((((.((((((.((((.((((((((((..((((.....))))...)))))))))).)))).)))))).)))).)))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
TGGGTTCTTGATAGTACTGGCATATGGACATTGTTGTAATAATCTTACTCTCAATGTTCATCTGTCCGTACTGCCAAGTGCCTG
dot-bracket secondary structure
.((((.((((.((((((.((((.((((((((((..((((.....))))...)))))))))).)))).)))))).)))).)))).
SIMILARITIES| miRBase sko-mir-2012: 0.000004 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
