ABOUT THIS RECORDspecies: Strongylocentrotus purpuratus
miRNA family: mir-4848
source: miRBase, original name: spu-mir-4848a (MI0017597)
Taxonomy by NCBI:
Strongylocentrotus purpuratus Strongylocentrotus Strongylocentrotidae Echinoida Echinacea Euechinoidea Echinoidea Echinozoa Eleutherozoa Echinodermata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGGTTGAGGCTTTTGGGCAGGA miRNA* GCGTCCAACCGTAACCTAAG mismatches: 5 bulges: 3 |
pre-miRNA
ATTAGTACTTTTGGGTTGAGGCTTTTGGGCAGGAGCGGCAGCGTCCAACCGTAACCTAAGTGACTTTG
dot-bracket secondary structure
...(((...(((((((((.((...((((((....((....)))))))))).)))))))))..)))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M, Evol Dev. 13:15-27(2011)., "microRNA complements in deuterostomes: origin and evolution of microRNAs"
ATTAGTACTTTTGGGTTGAGGCTTTTGGGCAGGAGCGGCAGCGTCCAACCGTAACCTAAGTGACTTTG
dot-bracket secondary structure
...(((...(((((((((.((...((((((....((....)))))))))).)))))))))..)))...
SIMILARITIES| miRBase spu-mir-4848b: 0.00000001 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M, Evol Dev. 13:15-27(2011)., "microRNA complements in deuterostomes: origin and evolution of microRNAs"
