ABOUT THIS RECORDspecies: Strongylocentrotus purpuratus
miRNA family: mir-4848
source: miRBase, original name: spu-mir-4848b (MI0017598)
Taxonomy by NCBI:
Strongylocentrotus purpuratus Strongylocentrotus Strongylocentrotidae Echinoida Echinacea Euechinoidea Echinoidea Echinozoa Eleutherozoa Echinodermata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGGTTGAGGCTTTGGGGCAGGA miRNA* CTAAGTCTGGGAAGTTTATCGAC mismatches: 3 bulges: 6 |
pre-miRNA
AGGGAGACTGTTGGGTTGAGGCTTTGGGGCAGGAGCAGCAGCATCCAACGTTGCACCTAAGTCTGGGAAGTTTATCGACGTTGACCCT
dot-bracket secondary structure
((((.(((.(((((....(((((((.(((((((.(((((..........))))).)))..)))).).)))))).))))))))..))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M, Evol Dev. 13:15-27(2011)., "microRNA complements in deuterostomes: origin and evolution of microRNAs"
AGGGAGACTGTTGGGTTGAGGCTTTGGGGCAGGAGCAGCAGCATCCAACGTTGCACCTAAGTCTGGGAAGTTTATCGACGTTGACCCT
dot-bracket secondary structure
((((.(((.(((((....(((((((.(((((((.(((((..........))))).)))..)))).).)))))).))))))))..))))
SIMILARITIES| miRBase spu-mir-4848a: 0.00000002 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M, Evol Dev. 13:15-27(2011)., "microRNA complements in deuterostomes: origin and evolution of microRNAs"
