ABOUT THIS RECORDspecies: Saccoglossus kowalevskii
miRNA family: mir-9
source: miRBase, original name: sko-mir-9 (MI0010148)
Taxonomy by NCBI:
Saccoglossus kowalevskii Saccoglossus Harrimaniidae Enteropneusta Hemichordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCTTTGGTTATCTAGCTGTAT miRNA* AAAGCTAGGTTACCAAAGACA mismatches: 2 bulges: 0 |
pre-miRNA
CTCTCGTTTTCTCTTTGGTTATCTAGCTGTATGAGTGTACATGACATTATAAAGCTAGGTTACCAAAGACAAAAACAGA
dot-bracket secondary structure
.(((.(((((.((((((((.((((((((.(((((.(((.....)))))))).)))))))).))))))))..))))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
CTCTCGTTTTCTCTTTGGTTATCTAGCTGTATGAGTGTACATGACATTATAAAGCTAGGTTACCAAAGACAAAAACAGA
dot-bracket secondary structure
.(((.(((((.((((((((.((((((((.(((((.(((.....)))))))).)))))))).))))))))..))))))))
SIMILARITIES| miRBase sko-mir-79: 1e-39 PMRD no hits microPC no hits | UniProt no hits RFAM mir-9: 0.00000000002 |
Identical with: sko-mir-79 from miRBase (MNEST034872) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
