ABOUT THIS RECORDspecies: Saccoglossus kowalevskii
miRNA family: mir-29
source: miRBase, original name: sko-mir-29a (MI0010150)
Taxonomy by NCBI:
Saccoglossus kowalevskii Saccoglossus Harrimaniidae Enteropneusta Hemichordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGCACCATATGAAATCAGTTT miRNA* ACTGGCTTTATTTGGTGCATGGA mismatches: 3 bulges: 1 |
pre-miRNA
AGAATGTTGTTATAATGGGAGACTGGCTTTATTTGGTGCATGGAGTACACTTTCATCCTCTAGCACCATATGAAATCAGTTTTCCATAGTGACATT
dot-bracket secondary structure
.......((((((.(((((((((((..(((((.((((((.(((((............))))))))))).)))))..))))))))))).))))))..
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
AGAATGTTGTTATAATGGGAGACTGGCTTTATTTGGTGCATGGAGTACACTTTCATCCTCTAGCACCATATGAAATCAGTTTTCCATAGTGACATT
dot-bracket secondary structure
.......((((((.(((((((((((..(((((.((((((.(((((............))))))))))).)))))..))))))))))).))))))..
SIMILARITIES| miRBase lgi-mir-29: 0.000005 PMRD no hits microPC no hits | UniProt no hits RFAM mir-29: 0.00002 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
