ABOUT THIS RECORDspecies: Saccoglossus kowalevskii
miRNA family: mir-449
source: miRBase, original name: sko-mir-34 (MI0010154)
Taxonomy by NCBI:
Saccoglossus kowalevskii Saccoglossus Harrimaniidae Enteropneusta Hemichordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGCAGTGTGGTTAGCTGGTTG miRNA* ACCATCTGATCATCTGCCTATA mismatches: 1 bulges: 2 |
pre-miRNA
GACTTACTATATGCCACAGTGTGGCAGTGTGGTTAGCTGGTTGTTAATTATAATTTCAACCATCTGATCATCTGCCTATACAGTGACATAACCAATCATC
C
dot-bracket secondary structure
.........((((.(((.(((((((((.((((((((.((((((.............)))))).))))))))))))).)))).))).))))..........
.
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M, Evol Dev. 13:15-27(2011)., "microRNA complements in deuterostomes: origin and evolution of microRNAs"
[2] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
GACTTACTATATGCCACAGTGTGGCAGTGTGGTTAGCTGGTTGTTAATTATAATTTCAACCATCTGATCATCTGCCTATACAGTGACATAACCAATCATC
C
dot-bracket secondary structure
.........((((.(((.(((((((((.((((((((.((((((.............)))))).))))))))))))).)))).))).))))..........
.
SIMILARITIES| miRBase cte-mir-34: 0.0000003 PMRD no hits microPC no hits | UniProt no hits RFAM mir-449: 0.00002 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M, Evol Dev. 13:15-27(2011)., "microRNA complements in deuterostomes: origin and evolution of microRNAs"
[2] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
