ABOUT THIS RECORDspecies: Saccoglossus kowalevskii
miRNA family: mir-25
source: miRBase, original name: sko-mir-92b (MI0010158)
Taxonomy by NCBI:
Saccoglossus kowalevskii Saccoglossus Harrimaniidae Enteropneusta Hemichordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TATTGCACTTGTCCCGGCCTGC miRNA* AGGTTAGGACTTTTGCAATGTT mismatches: 7 bulges: 0 |
pre-miRNA
AGCTTTTTTCTTTACCCGAGCTGTAAGGTTAGGACTTTTGCAATGTTGTTCTCGTCTAATATTGCACTTGTCCCGGCCTGCTGGCTAAGGTTATGTACAA
C
dot-bracket secondary structure
.............(((..((((...((((..((((...((((((((((........))))))))))...))))..))))...))))..))).........
.
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
AGCTTTTTTCTTTACCCGAGCTGTAAGGTTAGGACTTTTGCAATGTTGTTCTCGTCTAATATTGCACTTGTCCCGGCCTGCTGGCTAAGGTTATGTACAA
C
dot-bracket secondary structure
.............(((..((((...((((..((((...((((((((((........))))))))))...))))..))))...))))..))).........
.
SIMILARITIES| miRBase spu-mir-92b: 0.0000003 PMRD no hits microPC no hits | UniProt no hits RFAM mir-92: 0.000005 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
