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ABOUT THIS RECORD
ID:
MNEST034879
species:
Saccoglossus kowalevskii
miRNA family:
mir-125
source:
miRBase, original name:
sko-mir-125a
(
MI0010163
)
Taxonomy by NCBI:
Saccoglossus kowalevskii
Saccoglossus
Harrimaniidae
Enteropneusta
Hemichordata
Deuterostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCCCTGAGACCCTAACTTGTGA
miRNA*
ACAGGTTAGTGGCTTAGAATT
mismatches:
1
bulges:
3
View larger
pre-miRNA
CTCTATATGTGTATTACCTAA
TCCCTGAGACCCTAACTTGTGA
GAATTACCCAGCATTC
ACAGGTTAGTGGCTTAGAATT
GGGTGGTGCATTCATAGCAA
C
dot-bracket secondary structure
..((((..(((((((((((((
(..(((((.(((((((((((((
(............)))
))))))))).))))))).)))
)))))))))))..))))...
.
SIMILARITIES
miRBase
pma-mir-125
:
0.000001
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
lin-4: 0.00002
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
454
references
[
1
] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ,
Evol Dev. 11:50-68(2009).
,
"The deep evolution of metazoan microRNAs"