miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST034892
species: Saccoglossus kowalevskii
miRNA family: mir-252
source: miRBase, original name: sko-mir-252a (MI0010174)

Taxonomy by NCBI:
Saccoglossus kowalevskii Saccoglossus Harrimaniidae Enteropneusta Hemichordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CTAAGTACTAGTGCCGCAGGAGT

miRNA*
CCTGTCGTACTTGTGCTTAACA

mismatches: 3
bulges: 1

View larger
pre-miRNA
CATGACTGGCTGATCCAATACTAAGTACTAGTGCCGCAGGAGTCGTATATTTGAGTAACCCTGTCGTACTTGTGCTTAACATAGGATGTGCCAATATTCA
T


dot-bracket secondary structure
.((((.((((..((((.((..(((((((.(((((.(((((.((..(........)..))))))).))))).)))))))..)).))))..))))....)))
)



SIMILARITIES
miRBase tca-mir-252a: 0.0000003

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-252: 0.000005

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454

references

[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"




Liczniki na strone;