ABOUT THIS RECORDspecies: Saccoglossus kowalevskii
miRNA family: mir-46
source: miRBase, original name: sko-mir-281 (MI0010177)
Taxonomy by NCBI:
Saccoglossus kowalevskii Saccoglossus Harrimaniidae Enteropneusta Hemichordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTCATGGAGTTGCTCTCTTAA miRNA* AGGGGAGCATCGCCAGCGACGGT mismatches: 5 bulges: 1 |
pre-miRNA
AGGTGGAGTGCTCCTTGTTGGCGAGGGGAGCATCGCCAGCGACGGTATGGCACAATACGCTGTCATGGAGTTGCTCTCTTAATCGCAAGGTAGCCATTAC
A
dot-bracket secondary structure
..((((.(.(((((((((.((..(((((((((.(.(((..(((((..((......))..))))).))).).)))))))))..)))))))).)))).))))
.
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
AGGTGGAGTGCTCCTTGTTGGCGAGGGGAGCATCGCCAGCGACGGTATGGCACAATACGCTGTCATGGAGTTGCTCTCTTAATCGCAAGGTAGCCATTAC
A
dot-bracket secondary structure
..((((.(.(((((((((.((..(((((((((.(.(((..(((((..((......))..))))).))).).)))))))))..)))))))).)))).))))
.
SIMILARITIES| miRBase cin-mir-281: 0.00002 PMRD no hits microPC no hits | UniProt no hits RFAM mir-281: 0.0003 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
