ABOUT THIS RECORDspecies: Saccoglossus kowalevskii
miRNA family: mir-375
source: miRBase, original name: sko-mir-375 (MI0010219)
Taxonomy by NCBI:
Saccoglossus kowalevskii Saccoglossus Harrimaniidae Enteropneusta Hemichordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTGTTCGTTCGGCTCGCGCGA miRNA* GTCCGGGCCCCACGATCATGGCTTATAGC mismatches: 5 bulges: 7 |
pre-miRNA
CCGGTGTTGTTGGATTGTCCGGGCCCCACGATCATGGCTTATAGCGTAAACGCTTTGTTCGTTCGGCTCGCGCGACTTAATAACACGAT
dot-bracket secondary structure
...(((((((((..((((.((((((..((((.((........((((....)))).)).))))..)))))).))))..)))))))))...
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
CCGGTGTTGTTGGATTGTCCGGGCCCCACGATCATGGCTTATAGCGTAAACGCTTTGTTCGTTCGGCTCGCGCGACTTAATAACACGAT
dot-bracket secondary structure
...(((((((((..((((.((((((..((((.((........((((....)))).)).))))..)))))).))))..)))))))))...
SIMILARITIES| miRBase pma-mir-375a: 0.00002 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
