ABOUT THIS RECORDspecies: Ixodes scapularis
miRNA family: bantam
source: miRBase, original name: isc-bantam (MI0012259)
Taxonomy by NCBI:
Ixodes scapularis Ixodes Ixodinae Ixodidae Ixodoidea Ixodida Parasitiformes Acari Arachnida Chelicerata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAGATCATTGTGAAAGCTGATT miRNA* CTGGTTTTCACAATGATCGTCCAGA mismatches: 3 bulges: 2 |
pre-miRNA
CGCCGAAGAAACGCCAGACAAAACTGGTTTTCACAATGATCGTCCAGATGGACCTGAAGTCTGAGATCATTGTGAAAGCTGATTTTGTTGATTCAGAGCTT
C
dot-bracket secondary structure
)...((((........(((((((..((((((((((((((((...(((((.........))))).))))))))))))))))..))))))).........)))
)
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
CGCCGAAGAAACGCCAGACAAAACTGGTTTTCACAATGATCGTCCAGATGGACCTGAAGTCTGAGATCATTGTGAAAGCTGATTTTGTTGATTCAGAGCTT
C
dot-bracket secondary structure
)...((((........(((((((..((((((((((((((((...(((((.........))))).))))))))))))))))..))))))).........)))
)
SIMILARITIES| miRBase ame-bantam: 2.0E-11 PMRD no hits microPC no hits | UniProt no hits RFAM mbantam: 5.0E-43 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
