ABOUT THIS RECORDspecies: Ixodes scapularis
miRNA family: mir-9
source: miRBase, original name: isc-mir-79 (MI0012285)
Taxonomy by NCBI:
Ixodes scapularis Ixodes Ixodinae Ixodidae Ixodoidea Ixodida Parasitiformes Acari Arachnida Chelicerata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATAAAGCTAGGTTACCAAAGTTA miRNA* TTTTCTTTGGTTATCTAGCTGTATGA mismatches: 3 bulges: 3 |
pre-miRNA
AGAGGATGAAGGCGCTGATATTTTCTTTGGTTATCTAGCTGTATGAGTGATATTAACATCATAAAGCTAGGTTACCAAAGTTAACAGCACTGCCGTAATG
C
dot-bracket secondary structure
..........(((((((.((....(((((((.((((((((.(((((((.......)).))))).)))))))).))))))).)).))))...)))......
.
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
AGAGGATGAAGGCGCTGATATTTTCTTTGGTTATCTAGCTGTATGAGTGATATTAACATCATAAAGCTAGGTTACCAAAGTTAACAGCACTGCCGTAATG
C
dot-bracket secondary structure
..........(((((((.((....(((((((.((((((((.(((((((.......)).))))).)))))))).))))))).)).))))...)))......
.
SIMILARITIES| miRBase dpu-mir-9: 6e-18 PMRD no hits microPC no hits | UniProt no hits RFAM mir-9: 7e-27 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
