ABOUT THIS RECORDspecies: Ixodes scapularis
miRNA family: mir-87
source: miRBase, original name: isc-mir-87 (MI0012287)
Taxonomy by NCBI:
Ixodes scapularis Ixodes Ixodinae Ixodidae Ixodoidea Ixodida Parasitiformes Acari Arachnida Chelicerata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTGAGCAAAGTTTCAGGTGTG miRNA* TGCCTGAAAATTTGTCTCAAACCT mismatches: 2 bulges: 3 |
pre-miRNA
CACACATCTCGCTTCTTGACTGCCTGCCTGAAAATTTGTCTCAAACCTTTCATAGTGTAGGTGAGCAAAGTTTCAGGTGTGTTGTCTTGGAGGACACACT
G
dot-bracket secondary structure
........((.((((..(((.((.(((((((((.((((.(((..((((..........))))))))))).))))))))).)).)))..))))))......
.
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
CACACATCTCGCTTCTTGACTGCCTGCCTGAAAATTTGTCTCAAACCTTTCATAGTGTAGGTGAGCAAAGTTTCAGGTGTGTTGTCTTGGAGGACACACT
G
dot-bracket secondary structure
........((.((((..(((.((.(((((((((.((((.(((..((((..........))))))))))).))))))))).)).)))..))))))......
.
SIMILARITIES| miRBase bma-mir-87a: 0.00000002 PMRD no hits microPC no hits | UniProt no hits RFAM mir-87: 0.0000004 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
