ABOUT THIS RECORDspecies: Ixodes scapularis
source: miRBase, original name: isc-mir-276 (MI0016443)
Taxonomy by NCBI:
Ixodes scapularis Ixodes Ixodinae Ixodidae Ixodoidea Ixodida Parasitiformes Acari Arachnida Chelicerata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGGAACTTCATACCATGCTC miRNA* GCGGGGTACGGAGGTCTTACT mismatches: 3 bulges: 0 |
pre-miRNA
AGGGGAAGTCGCGCTATCGCGAGCGGGGTACGGAGGTCTTACTGTGAGCGTCAAGCCAGCTAGGAACTTCATACCATGCTCGCTATGGCAGACGACACGT
dot-bracket secondary structure
.......((((((((((.(((((((.((((.((((.((((((((...((.....))))).))))).)))).)))).))))))).))))).).))))....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Rota-Stabelli O, Campbell L, Brinkmann H, Edgecombe GD, Longhorn SJ, Peterson KJ, Pisani D, Philippe H, Telford MJ, Proc Biol Sci. 278:298-306(2011)., "A congruent solution to arthropod phylogeny: phylogenomics, microRNAs and morphology support monophyletic Mandibulata"
AGGGGAAGTCGCGCTATCGCGAGCGGGGTACGGAGGTCTTACTGTGAGCGTCAAGCCAGCTAGGAACTTCATACCATGCTCGCTATGGCAGACGACACGT
dot-bracket secondary structure
.......((((((((((.(((((((.((((.((((.((((((((...((.....))))).))))).)))).)))).))))))).))))).).))))....
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Rota-Stabelli O, Campbell L, Brinkmann H, Edgecombe GD, Longhorn SJ, Peterson KJ, Pisani D, Philippe H, Telford MJ, Proc Biol Sci. 278:298-306(2011)., "A congruent solution to arthropod phylogeny: phylogenomics, microRNAs and morphology support monophyletic Mandibulata"
