ABOUT THIS RECORDspecies: Ixodes scapularis
miRNA family: mir-279
source: miRBase, original name: isc-mir-279 (MI0012274)
Taxonomy by NCBI:
Ixodes scapularis Ixodes Ixodinae Ixodidae Ixodoidea Ixodida Parasitiformes Acari Arachnida Chelicerata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACTAGATCCACACTCATCCA miRNA* GATGACTGTGCCTCTAGTCCATG mismatches: 4 bulges: 1 |
pre-miRNA
CCTATCGTTGCTATTGATGACTGTGCCTCTAGTCCATGTGAATCTAGCTCATGACTAGATCCACACTCATCCATAGAAGCGGAACTTTGTCG
dot-bracket secondary structure
....(((((.((((.(((((.((((..(((((((.(((.(.......).))))))))))..)))).))))).)))).)))))..........
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
CCTATCGTTGCTATTGATGACTGTGCCTCTAGTCCATGTGAATCTAGCTCATGACTAGATCCACACTCATCCATAGAAGCGGAACTTTGTCG
dot-bracket secondary structure
....(((((.((((.(((((.((((..(((((((.(((.(.......).))))))))))..)))).))))).)))).)))))..........
SIMILARITIES| miRBase lgi-mir-279: 0.0000000003 PMRD no hits microPC no hits | UniProt no hits RFAM mir-279: 2e-39 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
