ABOUT THIS RECORDspecies: Ixodes scapularis
miRNA family: mir-29
source: miRBase, original name: isc-mir-285 (MI0012275)
Taxonomy by NCBI:
Ixodes scapularis Ixodes Ixodinae Ixodidae Ixodoidea Ixodida Parasitiformes Acari Arachnida Chelicerata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGCACCATTTGAATTCAGTTC miRNA* ACTGAGTTCGTTTGGTGGGT mismatches: 4 bulges: 2 |
pre-miRNA
ATCCAAATCCATCCTTGGGTCACTGAGTTCGTTTGGTGGGTAGAAGTGTGTCCAATTCTCTAGCACCATTTGAATTCAGTTCATCCAAAGAGTTCG
dot-bracket secondary structure
...........((.((((((.((((((((((..(((((((.((((.((....)).))))))..)))))..))))))))))..)))))).)).....
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
ATCCAAATCCATCCTTGGGTCACTGAGTTCGTTTGGTGGGTAGAAGTGTGTCCAATTCTCTAGCACCATTTGAATTCAGTTCATCCAAAGAGTTCG
dot-bracket secondary structure
...........((.((((((.((((((((((..(((((((.((((.((....)).))))))..)))))..))))))))))..)))))).)).....
SIMILARITIES| miRBase lgi-mir-29: 0.0003 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
