ABOUT THIS RECORDspecies: Ixodes scapularis
miRNA family: mir-305
source: miRBase, original name: isc-mir-305 (MI0016444)
Taxonomy by NCBI:
Ixodes scapularis Ixodes Ixodinae Ixodidae Ixodoidea Ixodida Parasitiformes Acari Arachnida Chelicerata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATTGTACTTCATCAGGTGCTCT miRNA* GCATCTTTTGGAGTGCAAATG mismatches: 3 bulges: 1 |
pre-miRNA
CAGTCACTAGTTAATTGTACTTCATCAGGTGCTCTGGAGTTCGGTTCGCACAACCAGGCATCTTTTGGAGTGCAAATGATAAGTGGCACG
dot-bracket secondary structure
..((((((.((((.((((((((((..((((((.((((.((.((...)).))..))))))))))..)))))))))).)))).))))))...
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Rota-Stabelli O, Campbell L, Brinkmann H, Edgecombe GD, Longhorn SJ, Peterson KJ, Pisani D, Philippe H, Telford MJ, Proc Biol Sci. 278:298-306(2011)., "A congruent solution to arthropod phylogeny: phylogenomics, microRNAs and morphology support monophyletic Mandibulata"
CAGTCACTAGTTAATTGTACTTCATCAGGTGCTCTGGAGTTCGGTTCGCACAACCAGGCATCTTTTGGAGTGCAAATGATAAGTGGCACG
dot-bracket secondary structure
..((((((.((((.((((((((((..((((((.((((.((.((...)).))..))))))))))..)))))))))).)))).))))))...
SIMILARITIES| miRBase ame-mir-305: 0.000000004 PMRD no hits microPC no hits | UniProt no hits RFAM mir-305: 8e-45 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Rota-Stabelli O, Campbell L, Brinkmann H, Edgecombe GD, Longhorn SJ, Peterson KJ, Pisani D, Philippe H, Telford MJ, Proc Biol Sci. 278:298-306(2011)., "A congruent solution to arthropod phylogeny: phylogenomics, microRNAs and morphology support monophyletic Mandibulata"
