ABOUT THIS RECORDspecies: Daphnia pulex
miRNA family: bantam
source: miRBase, original name: dpu-bantam (MI0012215)
Taxonomy by NCBI:
Daphnia pulex Daphnia Daphniidae Anomopoda Cladocera Diplostraca Phyllopoda Branchiopoda Crustacea Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAGATCATTGTGAAAGCTGATT miRNA* CTAGTTTTCTCAGTGATCTGCCAGA mismatches: 2 bulges: 2 |
pre-miRNA
TCGGCTTTTAAACCTCGAGACTAGTTTTCTCAGTGATCTGCCAGATATTATTTGAATTTCTGAGATCATTGTGAAAGCTGATTTTGTGGATAGCCTCGAC
T
dot-bracket secondary structure
..((((......((.(((((.((((((((.(((((((((..((((.(((.....))).))))))))))))).)))))))).))))).))..)))).....
.
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
TCGGCTTTTAAACCTCGAGACTAGTTTTCTCAGTGATCTGCCAGATATTATTTGAATTTCTGAGATCATTGTGAAAGCTGATTTTGTGGATAGCCTCGAC
T
dot-bracket secondary structure
..((((......((.(((((.((((((((.(((((((((..((((.(((.....))).))))))))))))).)))))))).))))).))..)))).....
.
SIMILARITIES| miRBase tca-bantam: 0.000000000005 PMRD no hits microPC no hits | UniProt no hits RFAM bantam: 0.00000000009 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
