miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Back to search results
ABOUT THIS RECORD
ID:
MNEST035037
species:
Daphnia pulex
miRNA family:
mir-993
source:
miRBase, original name:
dpu-mir-993
(
MI0012257
)
Taxonomy by NCBI:
Daphnia pulex
Daphnia
Daphniidae
Anomopoda
Cladocera
Diplostraca
Phyllopoda
Branchiopoda
Crustacea
Pancrustacea
Mandibulata
Arthropoda
Panarthropoda
Protostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GAAGCTCGTTTCTACAGGTATCT
miRNA*
ATACCCTGTAGCTCCGGGCTTTTG
mismatches:
4
bulges:
1
View larger
pre-miRNA
CAAAGCCTGCCAGTACCG
ATACCCTGTAGCTCCGGGCTTTTG
TTTGGTTTCTAATAATCA
GAAGCTCGTTTCTACAGGTATCT
TACGGGTAAACGAAAGA
A
dot-bracket secondary structure
.......((((.(((..(
(((((.(((((...((((((((((
.(((........))).))
))))))))...))))))))))).
))).))))..(....).
.
SIMILARITIES
miRBase
ame-mir-993
:
0.000000001
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
no hits
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
references
[
1
] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ,
Evol Dev. 11:50-68(2009).
,
"The deep evolution of metazoan microRNAs"