ABOUT THIS RECORDspecies: Acyrthosiphon pisum
miRNA family: mir-10
source: miRBase, original name: api-mir-10 (MI0013354)
Taxonomy by NCBI:
Acyrthosiphon pisum Acyrthosiphon Macrosiphini Aphidinae Aphididae Aphidoidea Aphidomorpha Aphidiformes Sternorrhyncha Hemiptera Paraneoptera Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACCCTGTAGATCCGAATTTGT miRNA* AAATTCGGTTCTAGAGAGGTTT mismatches: 2 bulges: 1 |
pre-miRNA
ATGCTCTACATCTACCCTGTAGATCCGAATTTGTTTGAAAAACGGCGACAAATTCGGTTCTAGAGAGGTTTGTGTGGTGCATA
dot-bracket secondary structure
((((.((((((..(((((.((((.(((((((((((...........))))))))))).)))).)).)))..)))))).)))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Sathyamurthy G, Swamy NR, J. Comp. Intell. Bioinf. 2:109-119(2009)., "Computational Identification of MicroRNA Homologs from Acyrthosiphon pisum (Pea Aphid)"
[2] Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Mereau A, Nicolas J, Tagu D, Jaubert-Possamai S, BMC Genomics. 11:281(2010)., "Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum"
ATGCTCTACATCTACCCTGTAGATCCGAATTTGTTTGAAAAACGGCGACAAATTCGGTTCTAGAGAGGTTTGTGTGGTGCATA
dot-bracket secondary structure
((((.((((((..(((((.((((.(((((((((((...........))))))))))).)))).)).)))..)))))).)))).
SIMILARITIES| miRBase ame-mir-10-1: 9e-35 PMRD no hits microPC no hits | UniProt no hits RFAM mir-10: 2e-26 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Sathyamurthy G, Swamy NR, J. Comp. Intell. Bioinf. 2:109-119(2009)., "Computational Identification of MicroRNA Homologs from Acyrthosiphon pisum (Pea Aphid)"
[2] Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Mereau A, Nicolas J, Tagu D, Jaubert-Possamai S, BMC Genomics. 11:281(2010)., "Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum"
