ABOUT THIS RECORDspecies: Acyrthosiphon pisum
miRNA family: mir-iab-4
source: miRBase, original name: api-mir-iab-4 (MI0013355)
Taxonomy by NCBI:
Acyrthosiphon pisum Acyrthosiphon Macrosiphini Aphidinae Aphididae Aphidoidea Aphidomorpha Aphidiformes Sternorrhyncha Hemiptera Paraneoptera Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACGTATACTAAATGTATCCTGA miRNA* GGTATACCTTCAGTATACGTAA mismatches: 4 bulges: 0 |
pre-miRNA
CCCTGTACGTATACTAAATGTATCCTGAGTGCATTATAAAACTGTCCGGTATACCTTCAGTATACGTAACAGG
dot-bracket secondary structure
.((((((((((((((.((.((((.(((.(.(((.........))))))).)))).)).))))))))).)))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Sathyamurthy G, Swamy NR, J. Comp. Intell. Bioinf. 2:109-119(2009)., "Computational Identification of MicroRNA Homologs from Acyrthosiphon pisum (Pea Aphid)"
CCCTGTACGTATACTAAATGTATCCTGAGTGCATTATAAAACTGTCCGGTATACCTTCAGTATACGTAACAGG
dot-bracket secondary structure
.((((((((((((((.((.((((.(((.(.(((.........))))))).)))).)).))))))))).)))))
SIMILARITIES| miRBase ame-mir-iab-4: 6e-17 PMRD no hits microPC no hits | UniProt no hits RFAM mir-iab-4: 8e-35 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Sathyamurthy G, Swamy NR, J. Comp. Intell. Bioinf. 2:109-119(2009)., "Computational Identification of MicroRNA Homologs from Acyrthosiphon pisum (Pea Aphid)"
