ABOUT THIS RECORDspecies: Aedes aegypti
miRNA family: mir-9
source: miRBase, original name: aae-mir-9a-1 (MI0013528)
Taxonomy by NCBI:
Aedes aegypti Stegomyia Aedes Aedes/Ochlerotatus group Culicini Culicinae Culicidae Culicoidea Culicimorpha Nematocera Diptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCTTTGGTTATCTAGCTGTATGA miRNA* ATAAAGCTAGCATACCGAAGTTA mismatches: 5 bulges: 0 |
pre-miRNA
GTCAAAGTTCTCTTTGGTTATCTAGCTGTATGAGTGAATTTAGAACATCATAAAGCTAGCATACCGAAGTTAATAGTTGAC
dot-bracket secondary structure
(((((.(((..(((((((...((((((.(((((((.........)).))))).))))))...)))))))..)))..)))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Li S, Mead EA, Liang S, Tu Z, BMC Genomics. 10:581(2009)., "Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs"
GTCAAAGTTCTCTTTGGTTATCTAGCTGTATGAGTGAATTTAGAACATCATAAAGCTAGCATACCGAAGTTAATAGTTGAC
dot-bracket secondary structure
(((((.(((..(((((((...((((((.(((((((.........)).))))).))))))...)))))))..)))..)))))
SIMILARITIES| miRBase aae-mir-9a-2: 9e-41 PMRD no hits microPC no hits | UniProt no hits RFAM mir-9: 1e-18 |
Identical with: aae-mir-9a-2 from miRBase (MNEST035173) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Li S, Mead EA, Liang S, Tu Z, BMC Genomics. 10:581(2009)., "Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs"
