ABOUT THIS RECORDspecies: Aedes aegypti
miRNA family: mir-34
source: miRBase, original name: aae-mir-34 (MI0013456)
Taxonomy by NCBI:
Aedes aegypti Stegomyia Aedes Aedes/Ochlerotatus group Culicini Culicinae Culicidae Culicoidea Culicimorpha Nematocera Diptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGCAGTGTGGTTAGCTGGTTG miRNA* ACCACTATCCGCCCTGCCGCC mismatches: 2 bulges: 1 |
pre-miRNA
CAAGGCAATACGCTATGGCAGTGTGGTTAGCTGGTTGTGTAGAACTTTGGGGGGCTTCCGTGGCGTTCGCGCGCACACGGGGGCTCAGATTCACAACCAC
TATCCGCCCTGCCGCCGCGAGGTGCCAGG
dot-bracket secondary structure
...((((...(((..((((((.((((.(((.((((((((.......((...(((((((((((((((....)))).))))))))))).))..)))))))))
)).)))).))))))..)))...))))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454, Solexa
references
[1] Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR, BMC Genomics. 11:119(2010)., "Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus"
[2] Li S, Mead EA, Liang S, Tu Z, BMC Genomics. 10:581(2009)., "Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs"
CAAGGCAATACGCTATGGCAGTGTGGTTAGCTGGTTGTGTAGAACTTTGGGGGGCTTCCGTGGCGTTCGCGCGCACACGGGGGCTCAGATTCACAACCAC
TATCCGCCCTGCCGCCGCGAGGTGCCAGG
dot-bracket secondary structure
...((((...(((..((((((.((((.(((.((((((((.......((...(((((((((((((((....)))).))))))))))).))..)))))))))
)).)))).))))))..)))...))))...
SIMILARITIES| miRBase aga-mir-34: 0.000000002 PMRD no hits microPC no hits | UniProt no hits RFAM mir-449: 6e-68 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454, Solexa
references
[1] Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR, BMC Genomics. 11:119(2010)., "Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus"
[2] Li S, Mead EA, Liang S, Tu Z, BMC Genomics. 10:581(2009)., "Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs"
