ABOUT THIS RECORDspecies: Aedes aegypti
miRNA family: mir-279
source: miRBase, original name: aae-mir-279 (MI0013494)
Taxonomy by NCBI:
Aedes aegypti Stegomyia Aedes Aedes/Ochlerotatus group Culicini Culicinae Culicidae Culicoidea Culicimorpha Nematocera Diptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACTAGATCCACACTCATTAA miRNA* GATGGGTGTGAATCTAGTGTTTCACA mismatches: 3 bulges: 4 |
pre-miRNA
ACATCCCAACGGTTGTCGATGGGTGTGAATCTAGTGTTTCACATGATTTTCGATAGCCTGTGACTAGATCCACACTCATTAACAAAAGTTGCCGG
dot-bracket secondary structure
......((((..((((..(((((((((.((((((....(((((.(...........).))))))))))).)))))))))..))))..))))....
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454, Solexa
references
[1] Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR, BMC Genomics. 11:119(2010)., "Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus"
[2] Li S, Mead EA, Liang S, Tu Z, BMC Genomics. 10:581(2009)., "Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs"
ACATCCCAACGGTTGTCGATGGGTGTGAATCTAGTGTTTCACATGATTTTCGATAGCCTGTGACTAGATCCACACTCATTAACAAAAGTTGCCGG
dot-bracket secondary structure
......((((..((((..(((((((((.((((((....(((((.(...........).))))))))))).)))))))))..))))..))))....
SIMILARITIES| miRBase cqu-mir-279: 8e-17 PMRD no hits microPC no hits | UniProt no hits RFAM mir-279: 1e-46 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454, Solexa
references
[1] Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR, BMC Genomics. 11:119(2010)., "Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus"
[2] Li S, Mead EA, Liang S, Tu Z, BMC Genomics. 10:581(2009)., "Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs"
