ABOUT THIS RECORDspecies: Aedes aegypti
source: miRBase, original name: aae-mir-2940 (MI0013489)
Taxonomy by NCBI:
Aedes aegypti Stegomyia Aedes Aedes/Ochlerotatus group Culicini Culicinae Culicidae Culicoidea Culicimorpha Nematocera Diptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGTTTATCTTATCTGTCGAGGC miRNA* CGACAGGGAGATAAATCACT mismatches: 0 bulges: 3 |
pre-miRNA
CATTGGTTTATCTTATCTGTCGAGGCAAGTTATTTTACCGGATAGTGTTTCTTTTCGTGAGCAATCACCACTATCCAGCTCTTCTTGTCGACAGGGAGAT
AAATCACTG
dot-bracket secondary structure
((.(((((((((((.(((((((..(((((..........((((((((.........((((....)))))))))))).......)))))))))))))))))
)))))).))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR, BMC Genomics. 11:119(2010)., "Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus"
CATTGGTTTATCTTATCTGTCGAGGCAAGTTATTTTACCGGATAGTGTTTCTTTTCGTGAGCAATCACCACTATCCAGCTCTTCTTGTCGACAGGGAGAT
AAATCACTG
dot-bracket secondary structure
((.(((((((((((.(((((((..(((((..........((((((((.........((((....)))))))))))).......)))))))))))))))))
)))))).))
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR, BMC Genomics. 11:119(2010)., "Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus"
