ABOUT THIS RECORDspecies: Aedes aegypti
source: miRBase, original name: aae-mir-2942 (MI0013506)
Taxonomy by NCBI:
Aedes aegypti Stegomyia Aedes Aedes/Ochlerotatus group Culicini Culicinae Culicidae Culicoidea Culicimorpha Nematocera Diptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TATTCGAGACTTCACGAGTTAAT miRNA* CAATTCGCTGTGGTCTCGAACGTACC mismatches: 2 bulges: 3 |
pre-miRNA
AATGTTATCAATTCGCTGTGGTCTCGAACGTACCTACATTGGATATTTTTGGTATTCGAGACTTCACGAGTTAATTCCCATT
dot-bracket secondary structure
((((..((.((((((.((.((((((((..(((((................))))))))))))).)))))))).))...))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Li S, Mead EA, Liang S, Tu Z, BMC Genomics. 10:581(2009)., "Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs"
AATGTTATCAATTCGCTGTGGTCTCGAACGTACCTACATTGGATATTTTTGGTATTCGAGACTTCACGAGTTAATTCCCATT
dot-bracket secondary structure
((((..((.((((((.((.((((((((..(((((................))))))))))))).)))))))).))...))))
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Li S, Mead EA, Liang S, Tu Z, BMC Genomics. 10:581(2009)., "Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs"
