ABOUT THIS RECORDspecies: Apis mellifera
miRNA family: mir-9
source: miRBase, original name: ame-mir-9a (MI0001596)
Taxonomy by NCBI:
Apis mellifera Apis Apini Apinae Apidae Apoidea Aculeata Apocrita Hymenoptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCTTTGGTTATCTAGCTGTATGA miRNA* ATAAAGCTAGGTTACCGGAGTTA mismatches: 3 bulges: 0 |
pre-miRNA
TGGCGCGGACATTTTCTTTGGTTATCTAGCTGTATGAGTATTATTCGACATCATAAAGCTAGGTTACCGGAGTTAAGCTCCTCGCCA
dot-bracket secondary structure
.((((.(((..((..(((((((.((((((((.(((((((........)).))))).)))))))).)))))))..))..))).)))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: array, RTPCR
references
[1] Weaver DB, Anzola JM, Evans JD, Reid JG, Reese JT, Childs KL, Zdobnov EM, Samanta MP, Miller J, Elsik CG, Genome Biol. 8:R97(2007)., "Computational and transcriptional evidence for microRNAs in the honey bee genome"
TGGCGCGGACATTTTCTTTGGTTATCTAGCTGTATGAGTATTATTCGACATCATAAAGCTAGGTTACCGGAGTTAAGCTCCTCGCCA
dot-bracket secondary structure
.((((.(((..((..(((((((.((((((((.(((((((........)).))))).)))))))).)))))))..))..))).)))).
SIMILARITIES| miRBase ngi-mir-9a: 1e-27 PMRD no hits microPC no hits | UniProt no hits RFAM mir-9: 0.00000000000008 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: array, RTPCR
references
[1] Weaver DB, Anzola JM, Evans JD, Reid JG, Reese JT, Childs KL, Zdobnov EM, Samanta MP, Miller J, Elsik CG, Genome Biol. 8:R97(2007)., "Computational and transcriptional evidence for microRNAs in the honey bee genome"
