ABOUT THIS RECORDspecies: Apis mellifera
miRNA family: mir-10
source: miRBase, original name: ame-mir-10-2 (MI0015954)
Taxonomy by NCBI:
Apis mellifera Apis Apini Apinae Apidae Apoidea Aculeata Apocrita Hymenoptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACCCTGTAGATCCGAATTTGT miRNA* AAATTCGGTTCTAGAGAGGTTT mismatches: 2 bulges: 1 |
pre-miRNA
CCCAGTTAATGCTCTACATCTACCCTGTAGATCCGAATTTGTTTGATAAGAGGCGACAAATTCGGTTCTAGAGAGGTTTGTGTGGTGCATACAGAGCTAC
dot-bracket secondary structure
...((((.((((.((((((..(((((.((((.(((((((((((...........))))))))))).)))).)).)))..)))))).))))....))))..
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RTPCR
references
[1] Weaver DB, Anzola JM, Evans JD, Reid JG, Reese JT, Childs KL, Zdobnov EM, Samanta MP, Miller J, Elsik CG, Genome Biol. 8:R97(2007)., "Computational and transcriptional evidence for microRNAs in the honey bee genome"
CCCAGTTAATGCTCTACATCTACCCTGTAGATCCGAATTTGTTTGATAAGAGGCGACAAATTCGGTTCTAGAGAGGTTTGTGTGGTGCATACAGAGCTAC
dot-bracket secondary structure
...((((.((((.((((((..(((((.((((.(((((((((((...........))))))))))).)))).)).)))..)))))).))))....))))..
SIMILARITIES| miRBase ame-mir-10-1: 5e-52 PMRD no hits microPC no hits | UniProt no hits RFAM mir-10: 3e-26 |
Identical with: ame-mir-10-1 from miRBase (MNEST035348) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RTPCR
references
[1] Weaver DB, Anzola JM, Evans JD, Reid JG, Reese JT, Childs KL, Zdobnov EM, Samanta MP, Miller J, Elsik CG, Genome Biol. 8:R97(2007)., "Computational and transcriptional evidence for microRNAs in the honey bee genome"
