ABOUT THIS RECORDspecies: Apis mellifera
miRNA family: mir-iab-4
source: miRBase, original name: ame-mir-iab-4 (MI0001598)
Taxonomy by NCBI:
Apis mellifera Apis Apini Apinae Apidae Apoidea Aculeata Apocrita Hymenoptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACGTATACTGAATGTATCCTGA miRNA* CGGTATACCTTCAGTATACGTAA mismatches: 2 bulges: 1 |
pre-miRNA
CGTGAAACCCCCTGTACGTATACTGAATGTATCCTGAGTGTATTTCTGTCCGGTATACCTTCAGTATACGTAACAGGAGGCTACAC
dot-bracket secondary structure
)(((...((.(((((((((((((((((.((((((.((..(.....)..)).)).)))).)))))))))))).))))).))...)))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RTPCR
references
[1] Weaver DB, Anzola JM, Evans JD, Reid JG, Reese JT, Childs KL, Zdobnov EM, Samanta MP, Miller J, Elsik CG, Genome Biol. 8:R97(2007)., "Computational and transcriptional evidence for microRNAs in the honey bee genome"
CGTGAAACCCCCTGTACGTATACTGAATGTATCCTGAGTGTATTTCTGTCCGGTATACCTTCAGTATACGTAACAGGAGGCTACAC
dot-bracket secondary structure
)(((...((.(((((((((((((((((.((((((.((..(.....)..)).)).)))).)))))))))))).))))).))...)))
SIMILARITIES| miRBase ngi-mir-iab-4: 4.0E-43 PMRD no hits microPC no hits | UniProt no hits RFAM 4mir-iab-4: 3.0E-32 |
Identical with: ngi-mir-iab-8 from miRBase (MNEST037599), ngi-mir-iab-4 from miRBase , nvi-mir-iab-8 from miRBase , nvi-mir-iab-4 from miRBase |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RTPCR
references
[1] Weaver DB, Anzola JM, Evans JD, Reid JG, Reese JT, Childs KL, Zdobnov EM, Samanta MP, Miller J, Elsik CG, Genome Biol. 8:R97(2007)., "Computational and transcriptional evidence for microRNAs in the honey bee genome"
