ABOUT THIS RECORDspecies: Bombyx mori
miRNA family: mir-2808
source: miRBase, original name: bmo-mir-2808a-1 (MI0012388)
Taxonomy by NCBI:
Bombyx mori Bombyx Bombycinae Bombycidae Bombyciformes Bombycoidea Obtectomera Ditrysia Heteroneura Neolepidoptera Glossata Lepidoptera Amphiesmenoptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CGTAGAATCTACCATCGGATCG miRNA* ATCCACTGAGAAGATCCGGCGAG mismatches: 5 bulges: 1 |
pre-miRNA
AGCCGTGCTTCGTAGAATCTACCATCGGATCGGAAACGCGATCCACTGAGAAGATCCGGCGAGAAACTCAGTGGGCTG
dot-bracket secondary structure
((((.((((((((.(.((((.(((..((((((......))))))..)).).)))).).)))).......)))))))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q, BMC Genomics. 11:148(2010)., "MicroRNAs of Bombyx mori identified by Solexa sequencing"
AGCCGTGCTTCGTAGAATCTACCATCGGATCGGAAACGCGATCCACTGAGAAGATCCGGCGAGAAACTCAGTGGGCTG
dot-bracket secondary structure
((((.((((((((.(.((((.(((..((((((......))))))..)).).)))).).)))).......)))))))).
SIMILARITIES| miRBase bmo-mir-2808e: 2e-17 PMRD no hits microPC no hits | UniProt no hits RFAM U2: 2e-23 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q, BMC Genomics. 11:148(2010)., "MicroRNAs of Bombyx mori identified by Solexa sequencing"
