ABOUT THIS RECORDspecies: Bombyx mori
miRNA family: mir-2808
source: miRBase, original name: bmo-mir-2808d (MI0014260)
Taxonomy by NCBI:
Bombyx mori Bombyx Bombycinae Bombycidae Bombyciformes Bombycoidea Obtectomera Ditrysia Heteroneura Neolepidoptera Glossata Lepidoptera Amphiesmenoptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCGGCGAGAAGCTCGGTGTGCT miRNA* TGCTTCGCAGAATCTACGACCGGAT mismatches: 5 bulges: 3 |
pre-miRNA
GGAGTATTGCTAACACTGGTCCTAGCAAAAGCAGTGCTTCGCAGAATCTACGACCGGATTGGAAATGCGACCCACTGAGAAGATCCGGCGAGAAGCTCGG
TGTGCTGCTTGGAATAGTTCTACGTATACTTA
dot-bracket secondary structure
.((((((.((((..((((.(((......((((((..(.(((.((..(((.((.(((((((.......((......))....))))))))))))..)))))
.)..))))))))).))))..)).)))))))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: SOLID
references
[1] Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J, Funct Integr Genomics. 10:405-415(2010)., "Novel microRNAs in silkworm (Bombyx mori)"
GGAGTATTGCTAACACTGGTCCTAGCAAAAGCAGTGCTTCGCAGAATCTACGACCGGATTGGAAATGCGACCCACTGAGAAGATCCGGCGAGAAGCTCGG
TGTGCTGCTTGGAATAGTTCTACGTATACTTA
dot-bracket secondary structure
.((((((.((((..((((.(((......((((((..(.(((.((..(((.((.(((((((.......((......))....))))))))))))..)))))
.)..))))))))).))))..)).)))))))).
SIMILARITIES| miRBase bmo-mir-2808a-1: 0.000000000000007 PMRD no hits microPC no hits | UniProt no hits RFAM U2: 1e-26 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: SOLID
references
[1] Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J, Funct Integr Genomics. 10:405-415(2010)., "Novel microRNAs in silkworm (Bombyx mori)"
