ABOUT THIS RECORDspecies: Bombyx mori
miRNA family: mir-iab-8
source: miRBase, original name: bmo-mir-iab-8 (MI0013534)
Taxonomy by NCBI:
Bombyx mori Bombyx Bombycinae Bombycidae Bombyciformes Bombycoidea Obtectomera Ditrysia Heteroneura Neolepidoptera Glossata Lepidoptera Amphiesmenoptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTACGTATACTGAAGGTATACCG miRNA* GATACATTCAGTATACGTACA mismatches: 2 bulges: 2 |
pre-miRNA
GTGTCATCTTCTGTTACGTATACTGAAGGTATACCGGACAAGAATCGCGCACTCAGGATACATTCAGTATACGTACAGAAGGCGACGC
dot-bracket secondary structure
(((((..(((((((.((((((((((((.((((.((.((...(.....)....)).)))))).)))))))))))))))))))..)))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RTPCR
references
[1] Huang Y, Zou Q, Tang SM, Wang LG, Shen XJ, Mol Biol Rep. 37:3171-3176(2010)., "Computational identification and characteristics of novel microRNAs from the silkworm (Bombyx mori L.)"
GTGTCATCTTCTGTTACGTATACTGAAGGTATACCGGACAAGAATCGCGCACTCAGGATACATTCAGTATACGTACAGAAGGCGACGC
dot-bracket secondary structure
(((((..(((((((.((((((((((((.((((.((.((...(.....)....)).)))))).)))))))))))))))))))..)))))
SIMILARITIES| miRBase bmo-mir-iab-4: 7e-45 PMRD no hits microPC no hits | UniProt no hits RFAM mir-iab-4: 1e-43 |
Identical with: bmo-mir-iab-4 from miRBase (MNEST035999) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RTPCR
references
[1] Huang Y, Zou Q, Tang SM, Wang LG, Shen XJ, Mol Biol Rep. 37:3171-3176(2010)., "Computational identification and characteristics of novel microRNAs from the silkworm (Bombyx mori L.)"
