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ABOUT THIS RECORD
ID:
MNEST036020
species:
Culex quinquefasciatus
miRNA family:
mir-99
source:
miRBase, original name:
cqu-mir-100
(
MI0013585
)
Taxonomy by NCBI:
Culex quinquefasciatus
Culex pipiens complex
Culex
Culex
Culicini
Culicinae
Culicidae
Culicoidea
Culicimorpha
Nematocera
Diptera
Endopterygota
Neoptera
Pterygota
Dicondylia
Insecta
Hexapoda
Pancrustacea
Mandibulata
Arthropoda
Panarthropoda
Protostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
AACCCGTAGATCCGAACTTGTG
miRNA*
CAAGGCCGGATATATGGGATCC
mismatches:
4
bulges:
0
View larger
pre-miRNA
AACAGCATTTCCCATTTGCGGG
AACCCGTAGATCCGAACTTGTG
CTGCCCTTTTTACACGTTA
CAAGGCCGGATATATGGGATCC
TGCCGATGGGTGGAA
AAAGCATCGA
dot-bracket secondary structure
....((.(((((((((.(((((
(.((((((.(((((..((((((
.((...........)).))
))))..))))).)))))).)))
))).))))))....)
)).)).....
SIMILARITIES
miRBase
aae-mir-100
:
2e-18
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
mir-10: 2e-36
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
Solexa
references
[
1
] Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR,
BMC Genomics. 11:119(2010).
,
"Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus"