ABOUT THIS RECORDspecies: Culex quinquefasciatus
miRNA family: mir-133
source: miRBase, original name: cqu-mir-133 (MI0013625)
Taxonomy by NCBI:
Culex quinquefasciatus Culex pipiens complex Culex Culex Culicini Culicinae Culicidae Culicoidea Culicimorpha Nematocera Diptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGGTCCCCTTCAACCAGCTGT miRNA* TAGCTGGTTGACTTCGGGTCAAAT mismatches: 5 bulges: 2 |
pre-miRNA
CTTCACCGAACAGTAGCTGGTTGACTTCGGGTCAAATCGACAAATATTTGCAAAGATATTTCCTTTGAGAAATCATTTGGTCCCCTTCAACCAGCTGTGG
ACGGTTGATTGATT
dot-bracket secondary structure
..((((((..((.(((((((((((....((..((((.....((((((((....))))))))....(((....)))))))..))...))))))))))))).
.))).)))......
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR, BMC Genomics. 11:119(2010)., "Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus"
CTTCACCGAACAGTAGCTGGTTGACTTCGGGTCAAATCGACAAATATTTGCAAAGATATTTCCTTTGAGAAATCATTTGGTCCCCTTCAACCAGCTGTGG
ACGGTTGATTGATT
dot-bracket secondary structure
..((((((..((.(((((((((((....((..((((.....((((((((....))))))))....(((....)))))))..))...))))))))))))).
.))).)))......
SIMILARITIES| miRBase aae-mir-133: 2e-33 PMRD no hits microPC no hits | UniProt no hits RFAM mir-133: 1e-53 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR, BMC Genomics. 11:119(2010)., "Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus"
