ABOUT THIS RECORDspecies: Culex quinquefasciatus
miRNA family: mir-275
source: miRBase, original name: cqu-mir-275 (MI0013568)
Taxonomy by NCBI:
Culex quinquefasciatus Culex pipiens complex Culex Culex Culicini Culicinae Culicidae Culicoidea Culicimorpha Nematocera Diptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCAGGTACCTGAAGTAGCGC miRNA* GCTAAGCAGGAACCGGGACT mismatches: 4 bulges: 2 |
pre-miRNA
CCCGGAATCCTTCCGATAGCGCGCGCTAAGCAGGAACCGGGACTTGGTCATTCGCTAGCAGTCAGGTACCTGAAGTAGCGCGCGTGATCGGAAGTGCCGC
C
dot-bracket secondary structure
..(((....((((((((.((((((((((..((((.(((..((((((((.....))))..)))).))).))))...)))))))))).))))))))..))).
.
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR, BMC Genomics. 11:119(2010)., "Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus"
CCCGGAATCCTTCCGATAGCGCGCGCTAAGCAGGAACCGGGACTTGGTCATTCGCTAGCAGTCAGGTACCTGAAGTAGCGCGCGTGATCGGAAGTGCCGC
C
dot-bracket secondary structure
..(((....((((((((.((((((((((..((((.(((..((((((((.....))))..)))).))).))))...)))))))))).))))))))..))).
.
SIMILARITIES| miRBase aae-mir-275: 2e-27 PMRD no hits microPC no hits | UniProt no hits RFAM mir-275: 6e-46 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR, BMC Genomics. 11:119(2010)., "Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus"
