ABOUT THIS RECORDspecies: Culex quinquefasciatus
miRNA family: mir-276
source: miRBase, original name: cqu-mir-276-1 (MI0013588)
Taxonomy by NCBI:
Culex quinquefasciatus Culex pipiens complex Culex Culex Culicini Culicinae Culicidae Culicoidea Culicimorpha Nematocera Diptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGGAACTTCATACCGTGCTCT miRNA* AGCGAGGTATAGAGTTCCTATG mismatches: 5 bulges: 0 |
pre-miRNA
GAGTTTGAAAGTTCACCCGCTAGCGAGGTATAGAGTTCCTATGCGTTGATTGGATTCGCTATCCATAGGAACTTCATACCGTGCTCTTGGATGGCTTTCC
GTTCATCAGA
dot-bracket secondary structure
(((...((((((.((.(((..((((.(((((..((((((((((.(((((......)))..)).))))))))))..))))).))))..))).)))))))).
.)))......
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR, BMC Genomics. 11:119(2010)., "Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus"
GAGTTTGAAAGTTCACCCGCTAGCGAGGTATAGAGTTCCTATGCGTTGATTGGATTCGCTATCCATAGGAACTTCATACCGTGCTCTTGGATGGCTTTCC
GTTCATCAGA
dot-bracket secondary structure
(((...((((((.((.(((..((((.(((((..((((((((((.(((((......)))..)).))))))))))..))))).))))..))).)))))))).
.)))......
SIMILARITIES| miRBase cqu-mir-276-3: 4e-50 PMRD no hits microPC no hits | UniProt no hits RFAM mir-276: 7e-49 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR, BMC Genomics. 11:119(2010)., "Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus"
