ABOUT THIS RECORDspecies: Culex quinquefasciatus
source: miRBase, original name: cqu-mir-2951 (MI0013621)
Taxonomy by NCBI:
Culex quinquefasciatus Culex pipiens complex Culex Culex Culicini Culicinae Culicidae Culicoidea Culicimorpha Nematocera Diptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGAGCTCAGCACGCAGGGGTGGC miRNA* CTACCCGGTTCCGTGTACTGGAAATTTTG mismatches: 4 bulges: 6 |
pre-miRNA
GGGAGAGCTCAGCACGCAGGGGTGGCGCACTACCCGCGTCTACCCGGTTCCGTGTACTGGAAATTTTGTC
dot-bracket secondary structure
..((((..((((.((((.((((((((((.......))).))))))....).)))).))))...))))...
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR, BMC Genomics. 11:119(2010)., "Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus"
GGGAGAGCTCAGCACGCAGGGGTGGCGCACTACCCGCGTCTACCCGGTTCCGTGTACTGGAAATTTTGTC
dot-bracket secondary structure
..((((..((((.((((.((((((((((.......))).))))))....).)))).))))...))))...
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR, BMC Genomics. 11:119(2010)., "Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus"
