ABOUT THIS RECORDspecies: Drosophila melanogaster
miRNA family: mir-307as
source: miRBase, original name: dme-mir-307b (MI0011577)
Taxonomy by NCBI:
Drosophila melanogaster melanogaster subgroup melanogaster group Sophophora Drosophila Drosophiliti Drosophilina Drosophilini Drosophilinae Drosophilidae Ephydroidea Acalyptratae Schizophora Cyclorrhapha Eremoneura Muscomorpha Brachycera Diptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCACACCCAGGTTGAGTGAGTC miRNA* CTCACTCAAGGAGGTTGTGATG mismatches: 5 bulges: 0 |
pre-miRNA
TTAGTTTCGTGGATACTCTGTCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATCGAAATAACATCACACCCAGGTTGAGTGAGTCAAAGCA
AGACAAAATGCTGCTAACTT
dot-bracket secondary structure
).((((..(..(......((((.((((.(.((((((((((...((.(((((((..................))))))).))...)))))))))).).))))
.)))).....)..).)))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC, Nat Genet. 42:6-9(2010)., "Evolutionary flux of canonical microRNAs and mirtrons in Drosophila"
TTAGTTTCGTGGATACTCTGTCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATCGAAATAACATCACACCCAGGTTGAGTGAGTCAAAGCA
AGACAAAATGCTGCTAACTT
dot-bracket secondary structure
).((((..(..(......((((.((((.(.((((((((((...((.(((((((..................))))))).))...)))))))))).).))))
.)))).....)..).)))).
SIMILARITIES| miRBase dme-mir-307b: 8.0E-64 PMRD no hits microPC no hits | UniProt no hits RFAM 7mir-67: 3.0E-26 |
Identical with: dps-mir-307b from miRBase (MNEST036969), dme-mir-307a from miRBase , dan-mir-307 from miRBase , dse-mir-307 from miRBase , dme-mir-307a from miRBase , dsi-mir-307 from miRBase , dya-mir-307 from miRBase , der-mir-307 from miRBase |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC, Nat Genet. 42:6-9(2010)., "Evolutionary flux of canonical microRNAs and mirtrons in Drosophila"
