ABOUT THIS RECORDspecies: Drosophila melanogaster
miRNA family: mir-983
source: miRBase, original name: dme-mir-983-2 (MI0005841)
Taxonomy by NCBI:
Drosophila melanogaster melanogaster subgroup melanogaster group Sophophora Drosophila Drosophiliti Drosophilina Drosophilini Drosophilinae Drosophilidae Ephydroidea Acalyptratae Schizophora Cyclorrhapha Eremoneura Muscomorpha Brachycera Diptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATAATACGTTTCGAACTAATGA miRNA* ATTAGGTAGTTACGCATTATCT mismatches: 6 bulges: 0 |
pre-miRNA
TATTATATTGCAATAATTAAATAATACGTTTCGAACTAATGATTTTCAGTTCATTCATTAGGTAGTTACGCATTATCTAGTTGTTGTAAACATTCAACT
dot-bracket secondary structure
.......((((((((((((.(((((.(((..(...(((((((............)))))))...)..))).))))).))))))))))))..........
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC, Genome Res. 17:1850-1864(2007)., "Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs"
TATTATATTGCAATAATTAAATAATACGTTTCGAACTAATGATTTTCAGTTCATTCATTAGGTAGTTACGCATTATCTAGTTGTTGTAAACATTCAACT
dot-bracket secondary structure
.......((((((((((((.(((((.(((..(...(((((((............)))))))...)..))).))))).))))))))))))..........
SIMILARITIES| miRBase dme-mir-983-2: 2e-51 PMRD no hits microPC no hits | UniProt no hits RFAM mir-983: 4e-50 |
Identical with: dme-mir-983-1 from miRBase (MNEST036541) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC, Genome Res. 17:1850-1864(2007)., "Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs"
