ABOUT THIS RECORDspecies: Drosophila melanogaster
source: miRBase, original name: dme-mir-3644 (MI0016044)
Taxonomy by NCBI:
Drosophila melanogaster melanogaster subgroup melanogaster group Sophophora Drosophila Drosophiliti Drosophilina Drosophilini Drosophilinae Drosophilidae Ephydroidea Acalyptratae Schizophora Cyclorrhapha Eremoneura Muscomorpha Brachycera Diptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CATAAACTATATTTAACCACTAT miRNA* mismatches: 7 bulges: 0 |
pre-miRNA
GTGAGTGATTATGGTTTAAGTAATACGAATTACATAAACTATATTTAACCACTATTCTTAG
dot-bracket secondary structure
(((..(((.(((((((((.(((((....))))).))))))))).)))..))).........
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Flynt AS, Greimann JC, Chung WJ, Lima CD, Lai EC, Mol Cell. 38:900-907(2010)., "MicroRNA biogenesis via splicing and exosome-mediated trimming in Drosophila"
GTGAGTGATTATGGTTTAAGTAATACGAATTACATAAACTATATTTAACCACTATTCTTAG
dot-bracket secondary structure
(((..(((.(((((((((.(((((....))))).))))))))).)))..))).........
SIMILARITIES| miRBase dme-mir-3644: 5e-29 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Flynt AS, Greimann JC, Chung WJ, Lima CD, Lai EC, Mol Cell. 38:900-907(2010)., "MicroRNA biogenesis via splicing and exosome-mediated trimming in Drosophila"
