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ABOUT THIS RECORD

ID: MNEST036746
species: Drosophila melanogaster
miRNA family: miR-iab
source: miRBase, original name: dme-mir-iab-4 (MI0000432)

Taxonomy by NCBI:
Drosophila melanogaster melanogaster subgroup melanogaster group Sophophora Drosophila Drosophiliti Drosophilina Drosophilini Drosophilinae Drosophilidae Ephydroidea Acalyptratae Schizophora Cyclorrhapha Eremoneura Muscomorpha Brachycera Diptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CGGTATACCTTCAGTATACGTAAC

miRNA*
AACGTATACTGAATGTATCCTGAG

mismatches: 5
bulges: 0

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pre-miRNA
TCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGA

dot-bracket secondary structure
((((..((((((((((((.((((.(((..((.....))..))).)))).))))))))))))...))))


SIMILARITIES
miRBase der-mir-iab-4: 4e-33

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-iab-4: 2e-29

Identical with: der-mir-iab-4 from miRBase (MNEST036231)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, 454, Solexa

references

[1] Mattick JS, Gagen MJ, Mol Biol Evol. 18:1611-1630(2001)., "The evolution of controlled multitasked gene networks: the role of introns and other noncoding RNAs in the development of complex organisms"
[2] Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B, Gaasterland T, Meyer J, Tuschl T, Dev Cell. 5:337-350(2003)., "The small RNA profile during Drosophila melanogaster development"
[3] Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC, Genome Res. 17:1850-1864(2007)., "Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs"
[4] Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis M, Genome Res. 17:1865-1879(2007)., "Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes"




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