ABOUT THIS RECORDspecies: Drosophila melanogaster
miRNA family: mir-iab-8
source: miRBase, original name: dme-mir-iab-8 (MI0005805)
Taxonomy by NCBI:
Drosophila melanogaster melanogaster subgroup melanogaster group Sophophora Drosophila Drosophiliti Drosophilina Drosophilini Drosophilinae Drosophilidae Ephydroidea Acalyptratae Schizophora Cyclorrhapha Eremoneura Muscomorpha Brachycera Diptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGATACATTCAGTATACGTTTA miRNA* TTACGTATACTGAAGGTATACCGG mismatches: 2 bulges: 2 |
pre-miRNA
TCGTGTTACGTATACTGAAGGTATACCGGATAGGATACACTCAGGATACATTCAGTATACGTTTACGA
dot-bracket secondary structure
(((((..((((((((((((.((((.((.((..(....)..)).)))))).)))))))))))).)))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454, in-situ
deep sequencing data evidence
references
[1] Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC, Genome Res. 17:1850-1864(2007)., "Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs"
[2] Stark A, Bushati N, Jan CH, Kheradpour P, Hodges E, Brennecke J, Bartel DP, Cohen SM, Kellis M, Genes Dev. 22:8-13(2008)., "A single Hox locus in Drosophila produces functional microRNAs from opposite DNA strands"
TCGTGTTACGTATACTGAAGGTATACCGGATAGGATACACTCAGGATACATTCAGTATACGTTTACGA
dot-bracket secondary structure
(((((..((((((((((((.((((.((.((..(....)..)).)))))).)))))))))))).)))))
SIMILARITIES| miRBase der-mir-iab-4: 4e-33 PMRD no hits microPC no hits | UniProt no hits RFAM mir-iab-4: 2e-29 |
Identical with: der-mir-iab-4 from miRBase (MNEST036231) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454, in-situ
deep sequencing data evidence
references
[1] Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC, Genome Res. 17:1850-1864(2007)., "Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs"
[2] Stark A, Bushati N, Jan CH, Kheradpour P, Hodges E, Brennecke J, Bartel DP, Cohen SM, Kellis M, Genes Dev. 22:8-13(2008)., "A single Hox locus in Drosophila produces functional microRNAs from opposite DNA strands"
