ABOUT THIS RECORDspecies: Drosophila persimilis
miRNA family: mir-46
source: miRBase, original name: dpe-mir-281-1 (MI0009281)
SEQUENCE & STRUCTURE| miRNA TGTCATGGAATTGCTCTCTTTGT miRNA* AAAGAGAGCTGTCCGTCGACAGT mismatches: 2 bulges: 2 |
pre-miRNA
CGAATAGGTGAATAAAGAGAGCTGTCCGTCGACAGTCAACGTACCAATTTAATACTGTCATGGAATTGCTCTCTTTGTATAATATTCG
dot-bracket secondary structure
((((((..((.(((((((((((..(((((.((((((.................)))))))))))...))))))))))).)).))))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie, Nature. 450:203-218(2007)., "Evolution of genes and genomes on the Drosophila phylogeny"
CGAATAGGTGAATAAAGAGAGCTGTCCGTCGACAGTCAACGTACCAATTTAATACTGTCATGGAATTGCTCTCTTTGTATAATATTCG
dot-bracket secondary structure
((((((..((.(((((((((((..(((((.((((((.................)))))))))))...))))))))))).)).))))))
SIMILARITIES| miRBase dps-mir-281-1: 7e-45 PMRD no hits microPC no hits | UniProt no hits RFAM mir-46: 0.00007 |
Identical with: dps-mir-281-1 from miRBase (MNEST036955) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie, Nature. 450:203-218(2007)., "Evolution of genes and genomes on the Drosophila phylogeny"
