ABOUT THIS RECORDspecies: Drosophila pseudoobscura
miRNA family: mir-190
source: miRBase, original name: dps-mir-190 (MI0011596)
Taxonomy by NCBI:
Drosophila pseudoobscura pseudoobscura subgroup obscura group Sophophora Drosophila Drosophiliti Drosophilina Drosophilini Drosophilinae Drosophilidae Ephydroidea Acalyptratae Schizophora Cyclorrhapha Eremoneura Muscomorpha Brachycera Diptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCCAGGAATCAAACATATTATTA miRNA* AGATATGTTTGATATTCTTGGTTG mismatches: 1 bulges: 3 |
pre-miRNA
ATTGGGGATTCCAGTGAGATATGTTTGATATTCTTGGTTGTTACATTCAAGAGTTCACCCAGGAATCAAACATATTATTACTGTGATACCCGGA
dot-bracket secondary structure
.(((((.((..((((((((((((((((((..((((((.((..((........)).)).)))))))))))))))))).))))))..)).))))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC, Nat Genet. 42:6-9(2010)., "Evolutionary flux of canonical microRNAs and mirtrons in Drosophila"
ATTGGGGATTCCAGTGAGATATGTTTGATATTCTTGGTTGTTACATTCAAGAGTTCACCCAGGAATCAAACATATTATTACTGTGATACCCGGA
dot-bracket secondary structure
.(((((.((..((((((((((((((((((..((((((.((..((........)).)).)))))))))))))))))).))))))..)).))))).
SIMILARITIES| miRBase dme-mir-190: 4e-34 PMRD no hits microPC no hits | UniProt no hits RFAM mir-190: 5e-37 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC, Nat Genet. 42:6-9(2010)., "Evolutionary flux of canonical microRNAs and mirtrons in Drosophila"
