ABOUT THIS RECORDspecies: Drosophila pseudoobscura
miRNA family: mir-46
source: miRBase, original name: dps-mir-281-1 (MI0001339)
Taxonomy by NCBI:
Drosophila pseudoobscura pseudoobscura subgroup obscura group Sophophora Drosophila Drosophiliti Drosophilina Drosophilini Drosophilinae Drosophilidae Ephydroidea Acalyptratae Schizophora Cyclorrhapha Eremoneura Muscomorpha Brachycera Diptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTCATGGAATTGCTCTCTTTGT miRNA* AAAGAGAGCTGTCCGTCGACAGT mismatches: 2 bulges: 2 |
pre-miRNA
CGAATAGGTGAATAAAGAGAGCTGTCCGTCGACAGTCAACGTACCAATTTAATACTGTCATGGAATTGCTCTCTTTGTATAATATTCG
dot-bracket secondary structure
((((((..((.(((((((((((..(((((.((((((.................)))))))))))...))))))))))).)).))))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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CGAATAGGTGAATAAAGAGAGCTGTCCGTCGACAGTCAACGTACCAATTTAATACTGTCATGGAATTGCTCTCTTTGTATAATATTCG
dot-bracket secondary structure
((((((..((.(((((((((((..(((((.((((((.................)))))))))))...))))))))))).)).))))))
SIMILARITIES| miRBase dpe-mir-281-1: 7e-45 PMRD no hits microPC no hits | UniProt no hits RFAM mir-46: 0.00007 |
Identical with: dpe-mir-281-1 from miRBase (MNEST036875) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
